These CKAN Versions are exactely matched:

• 2.10.0
• 2.10.1
• 2.10.2
• 2.10.3
• 2.10.4
• 2.10.5
• 2.10.6
• 2.10.7
• 2.10.8
• 2.10.9
• 2.11.0
• 2.11.1
• 2.11.2
• 2.11.3
• 2.11.4
• 2.12.0
• 2.9.0
• 2.9.0a
• 2.9.1
• 2.9.10
• 2.9.11
• 2.9.13
• 2.9.2
• 2.9.3
• 2.9.4
• 2.9.5
• 2.9.6
• 2.9.7
• 2.9.8
• 2.9.9

ckanext-bioschemaharvester

This plug-in is an extension to CKAN Harvester to harvest (bio)schema datasets from repositories using (bio)schema. Example: MassBank Repo

This harvester is developed using the offical CKAN Harvester https://github.com/ckan/ckanext-harvest following the actual Harvest Interface of gather, fetch and import techniques.

When installed, you can see an option to use as BioSchema Scrapper/Harvest

As name suggests, this harvester is more of a web-scrapper. It is developed using Beautiful scoop to harvest/fetch metadata from HTML page of the dataset (tested only on MassBank Repo)

Note: This plugin uses migrated tables from other plugin to store metadata to desired metadata tables without overwriting default ckan tables in the database. So, see that you already have these tables in your ckan instance.

• https://github.com/bhavin2897/ckanext-rdkit-visuals
• https://github.com/bhavin2897/ckanext-related_resources

Requirements

If your extension works across different versions you can add the following table:

Compatibility with core CKAN versions:

Installation

To install ckanext-bioschemaharvester:

Activate your CKAN virtual environment, for example:

 . /usr/lib/ckan/default/bin/activate

Clone the source and install it on the virtualenv

git clone https://github.com/bhavin2897/ckanext-bioschemaharvester.git
cd ckanext-bioschemaharvester
pip install -e .
pip install -r requirements.txt

Add bioschemaharvester to the ckan.plugins s